Gene Score gda Association Type Type Original DB Sentence supporting the association PMID PMID Year
Entrez Id: 1234
Gene Symbol: CCR5
CCR5
0.100 AlteredExpression group BEFREE β-arrestin2 expression was significantly lower in active IBD than that in remissive IBD and normal controls, and it had a negative correlation with CCR5 expression (p = .01, r = -.247). 28140695 2017
Entrez Id: 1524
Gene Symbol: CX3CR1
CX3CR1
0.020 Biomarker group BEFREE [(3<i>S</i>,4<i>R</i>)-1-[2-Chloro-6-(trifluoromethyl)benzyl]-3-{[1-(cyclohex-1-en-1-ylmethyl)piperidin-4-yl]carbamoyl}-4-methylpyrrolidin-3-yl]acetic acid (2S)-hydroxy(phenyl)acetate (E6130) is an orally available highly selective modulator of CX3CR1 that may be effective for treatment of inflammatory bowel disease. 28842393 2017
Entrez Id: 1401
Gene Symbol: CRP
CRP
0.100 AlteredExpression group BEFREE Zinc levels did not correlate with disease activity status in CD or UC patients either.In conclusion, beside CRP and fecal calprotectin, serum 25(OH)D levels, but not serum zinc levels, may be an additional useful and noninvasive marker for characterizing different disease activity status of IBD patients. 30985701 2019
Entrez Id: 2146
Gene Symbol: EZH2
EZH2
0.040 Biomarker group BEFREE Zeste homolog 2 (EZH2) has sparked extensive interest because of its pleiotropic roles in distinct pathologic contexts.<b>Areas covered</b>: This review summarizes the epigenetic functions and the biological significance of EZH2 in the etiology of rheumatoid arthritis (RA), systemic lupus erythematosus (SLE), type 1 diabetes (T1D), inflammatory bowel disease (IBD), multiple sclerosis (MS), and systemic sclerosis (SSc). 31747802 2019
Entrez Id: 9447
Gene Symbol: AIM2
AIM2
0.020 Biomarker group BEFREE Yet, the roles of the AIM2 inflammasome in IBD and the early phases of colorectal cancer remain ill-defined. 27524110 2017
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.600 Biomarker group BEFREE Women patients treated with TNFα inhibitors for inflammatory bowel diseases showed a higher risk of developing severe reactions with scalp and skin-fold involvement. 28218339 2017
Entrez Id: 145957
Gene Symbol: NRG4
NRG4
0.010 AlteredExpression group BEFREE With regard to the potential clinical importance of this pathway, NRG4 expression was decreased in human inflammatory bowel disease samples and mouse models of colitis, suggesting that activation of ErbB4 is altered in disease. 23033483 2012
Entrez Id: 3687
Gene Symbol: ITGAX
ITGAX
0.030 Biomarker group BEFREE With regard to appropriate healthy volunteers, children with IBD had elevated percentage of DR3-expressing CD4(+), CD8(+), CD11c(+) and CD20(+) PBMCs which, with the exception of DR3(+) CD11c(+) cells in children with ulcerative colitis, was correlated with CRP level in blood. 27001939 2017
Entrez Id: 7076
Gene Symbol: TIMP1
TIMP1
0.100 Biomarker group BEFREE With immunohistochemistry, protein localization differences of MMP1, MMP3, REG1A, and TIMP1 were shown between active IBD and control mucosa. 24378596 2014
Entrez Id: 2323
Gene Symbol: FLT3LG
FLT3LG
0.010 Biomarker group BEFREE While we did not observe changes in serum Flt3L during DSS-induced colitis in mice or plasma from inflammatory bowel disease (IBD) patients, elevated Flt3L levels were detected in acute malaria patients. 29317685 2018
Entrez Id: 4340
Gene Symbol: MOG
MOG
0.020 Biomarker group BEFREE While Tregs from Eos cKO mice displayed normal suppressive function in vitro, Eos cKO mice developed severe Experimental Autoimmune Encephalomyletis (EAE) following immunization with myelin oligodendrocyte glycoprotein (MOG) and Eos cKO Treg were unable to suppress Inflammatory Bowel Disease (IBD). 31296356 2019
Entrez Id: 1113
Gene Symbol: CHGA
CHGA
0.020 Biomarker group BEFREE While there is growing awareness of a relationship between chromogranin-A (CHGA) and susceptibility to inflammatory conditions, the role of human catestatin [(hCTS); CHGA<sub>352-67</sub>] in the natural history of established inflammatory bowel disease is not known. 28871257 2017
Entrez Id: 26191
Gene Symbol: PTPN22
PTPN22
0.400 Biomarker group BEFREE While the role of PTPN22 in modulating molecular pathways involved in IBD pathogenesis is well studied, its impact on shaping the intestinal microbiota has not been addressed in depth. 31107248 2019
Entrez Id: 3718
Gene Symbol: JAK3
JAK3
0.020 GeneticVariation group BEFREE While the inactivation mutations that eliminate JAK3 function lead to the immunological disorders such as severe combined immunodeficiency, activation mutations, causing constitutive JAK3 signaling, are known to trigger various types of cancer or are responsible for autoimmune diseases, such as rheumatoid arthritis, psoriasis, or inflammatory bowel diseases. 30929155 2019
Entrez Id: 57217
Gene Symbol: TTC7A
TTC7A
0.060 GeneticVariation group BEFREE While specific mutations in interleukin 10 (IL-10), the IL-10 receptor (IL-10R), and mutations in NCF2, XIAP, LRBA, and TTC7 have been identified in VEO-IBD, polymorphisms in these genes are also associated with increased risk of developing IBD in adolescence or adulthood. 28551707 2017
Entrez Id: 987
Gene Symbol: LRBA
LRBA
0.050 Biomarker group BEFREE While specific mutations in interleukin 10 (IL-10), the IL-10 receptor (IL-10R), and mutations in NCF2, XIAP, LRBA, and TTC7 have been identified in VEO-IBD, polymorphisms in these genes are also associated with increased risk of developing IBD in adolescence or adulthood. 28551707 2017
Entrez Id: 3586
Gene Symbol: IL10
IL10
0.700 GeneticVariation group BEFREE While specific mutations in interleukin 10 (IL-10), the IL-10 receptor (IL-10R), and mutations in NCF2, XIAP, LRBA, and TTC7 have been identified in VEO-IBD, polymorphisms in these genes are also associated with increased risk of developing IBD in adolescence or adulthood. 28551707 2017
Entrez Id: 5196
Gene Symbol: PF4
PF4
0.010 Biomarker group BEFREE While in CD patients, the cut-off level of PF4 was 19.24 mg/mL.Serum PF4 levels could be a potential biomarker for monitoring the disease activity of inflammatory bowel disease. 28296751 2017
Entrez Id: 24146
Gene Symbol: CLDN15
CLDN15
0.010 AlteredExpression group BEFREE While expression of claudin-2 and claudin-15 has been studied in inflammatory bowel disease (IBD) and celiac disease (CD), it has not been assessed in other malabsorptive diseases, and no reports have compared expression in children and adults. 31605016 2020
Entrez Id: 9075
Gene Symbol: CLDN2
CLDN2
0.090 AlteredExpression group BEFREE While expression of claudin-2 and claudin-15 has been studied in inflammatory bowel disease (IBD) and celiac disease (CD), it has not been assessed in other malabsorptive diseases, and no reports have compared expression in children and adults. 31605016 2020
Entrez Id: 8163
Gene Symbol: CDR3
CDR3
0.010 GeneticVariation group BEFREE While a very small number of expanded public CDR3 sequences are highly shared between active CD and UC, the majority of significantly expanded TCRβ CDR3 clonotypes are private to CD and UC patients with equivalent prevalence among IBD patients. 29988119 2018
Entrez Id: 7124
Gene Symbol: TNF
TNF
0.600 Biomarker group BEFREE While tumor necrosis factor (TNF) antagonists remain the biologic of choice for majority of patients with moderate-to-severe IBD, IL-12/23, and IL-23 antagonists should be considered for first- or second-line therapy because of their efficacy in biologic-naïve and experienced patients. 30884245 2019
Entrez Id: 27034
Gene Symbol: ACAD8
ACAD8
0.100 Biomarker group BEFREE Whether vedolizumab may be effective as a treatment for primary sclerosing cholangitis [PSC] in patients with inflammatory bowel disease [IBD] remains controversial. 31056693 2019
Entrez Id: 79148
Gene Symbol: MMP28
MMP28
0.020 Biomarker group BEFREE Whether the malignancy associated MMP-7 and MMP-13 or the recently cloned MMP-28 convey a certain meaning for intestinal homeostasis and pathogenesis of IBD is currently unknown. 20568971 2010
Entrez Id: 4322
Gene Symbol: MMP13
MMP13
0.030 Biomarker group BEFREE Whether the malignancy associated MMP-7 and MMP-13 or the recently cloned MMP-28 convey a certain meaning for intestinal homeostasis and pathogenesis of IBD is currently unknown. 20568971 2010